Novel 1-benzyl-2-indolinone indole hybrids as tyrosine kinase inhibitors: Design, synthesis, and biological activity evaluation

dc.contributor.authorCihan-Ustundag, Gokce
dc.contributor.authorCinek, Tugce
dc.contributor.authorSancar, Serap
dc.contributor.authorYildirim, Merve
dc.contributor.authorGenc-Akar, Oykum
dc.contributor.authorOzen-Eroglu, Gunes
dc.contributor.authorKarali, Nilgun
dc.date.accessioned2026-08-12T17:42:49Z
dc.date.issued2026
dc.departmentFırat Üniversitesi
dc.description.abstractIn the present study, new 1-benzyl-2-indolinone indole hybrids (4a-s) were synthesized and their cytotoxic effects were determined against human breast (MCF-7 and MDA-MB 231), lung (A549), kidney (CAKI-1 and A498), colon (HT-29 and HCT-116), and pancreas (MIA PaCa-2) cancer cells by MTT assay. Some of the tested compounds showed significantly better inhibitory effects and safety profiles than sunitinib malate against A498 and MIA PaCa-2 cells. Compound 4s showed a selective and significant cytotoxic effect on MIA PaCa-2 cells (IC50 = 0.15 mu M; SI > 666.7). Compound 4b displayed significant cytotoxic effects on both A498 (IC50 = 0.87 mu M; SI > 58.3) and MIA PaCa-2 (IC50 = 0.13 mu M; SI = 390.0) cells. Compound 4b in A498 cells and compounds 4a-c, 4h, and 4s in MIA PaCa-2 cells significantly decreased general tyrosine kinase activity and induced apoptosis, accompanied by reduced ERK signalings. The inhibitory activities of compounds 4a-c, 4h, and 4s against SRC, PDGFR-beta, and c-MET kinases were assessed in MIA PaCa-2 cells. Compounds 4a, 4b, 4h, and 4s inhibited PDGFR-beta, with 4h and 4s additionally targeting c-MET, while 4a, 4b, and 4h also demonstrated SRC inhibition. In this study, lead compounds 4b and 4s were identified as selective cytotoxic agents against human pancreatic carcinoma cells through induction of apoptosis and inhibition of SRC/PDGFR-beta/c-MET signaling. Notably, compounds 4b and 4s demonstrated a significantly better safety profile than sunitinib malate against noncancerous cells, underscoring their broader therapeutic potential. To understand their potential binding modes, molecular modeling studies were performed at the ATP-binding domains of SRC, PDGFR, and c-MET kinases.
dc.description.sponsorshipScientific and Technological Research Council of Turkey (TUBITAK) [122S051]; TUBITAK Scientist Support Programs Presidency (BIDEB) 2211-A Domestic PhD Scholarship Program; Istanbul University Scientific Research Projects [24778, 36598]
dc.description.sponsorshipThis study was supported by Scientific and Technological Research Council of Turkey (TUBITAK) under the Grant Number 122S051 and by the TUBITAK Scientist Support Programs Presidency (BIDEB) 2211-A Domestic PhD Scholarship Program. The authors thank to TUBITAK for their supports. This study was also supported by Istanbul University Scientific Research Projects. Project Numbers: 24778 and 36598.
dc.identifier.doi10.1016/j.ejmech.2025.118509
dc.identifier.issn0223-5234
dc.identifier.issn1768-3254
dc.identifier.orcid0000-0001-8875-3522
dc.identifier.pmid41443081
dc.identifier.scopus2-s2.0-105025429201
dc.identifier.scopusqualityQ1
dc.identifier.urihttps://doi.org/10.1016/j.ejmech.2025.118509
dc.identifier.urihttps://hdl.handle.net/11508/59887
dc.identifier.volume304
dc.identifier.wosWOS:001651940200001
dc.identifier.wosqualityQ1
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherElsevier France-Editions Scientifiques Medicales Elsevier
dc.relation.ispartofEuropean Journal of Medicinal Chemistry
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.snmzKA_WoS_20260511
dc.subject2-Indolinone
dc.subjectIndole
dc.subjectCytotoxicity
dc.subjectTyrosine kinase
dc.subjectSRC
dc.subjectPDGFR
dc.subjectc-MET
dc.subjectApoptosis
dc.subjectAKT/ERK
dc.titleNovel 1-benzyl-2-indolinone indole hybrids as tyrosine kinase inhibitors: Design, synthesis, and biological activity evaluation
dc.typeArticle

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